INFO
Name: samtools
Version: 1.23.1-1.el10_2
Arch: x86_64
Summary: Tools for nucleotide sequence alignments in the SAM format
License: MIT
Vendor: Fedora Project
Build Host: buildvm-x86-20.rdu3.fedoraproject.org
Build Date: Thu Mar 19 12:33:05 2026
Size: 1596897
URL: http://www.htslib.org/
Description: SAM (Sequence Alignment/Map) is a flexible generic format for storing
nucleotide sequence alignment.
SAM Tools provide various utilities for manipulating alignments in the
SAM format, including sorting, merging, indexing and generating
alignments in a per-position format.
FILES
/usr/bin/ace2sam
/usr/bin/blast2sam.pl
/usr/bin/bowtie2sam.pl
/usr/bin/export2sam.pl
/usr/bin/fasta-sanitize.pl
/usr/bin/interpolate_sam.pl
/usr/bin/maq2sam-long
/usr/bin/maq2sam-short
/usr/bin/md5fa
/usr/bin/md5sum-lite
/usr/bin/novo2sam.pl
/usr/bin/plot-ampliconstats
/usr/bin/plot-bamstats
/usr/bin/psl2sam.pl
/usr/bin/sam2vcf.pl
/usr/bin/samtools
/usr/bin/samtools.pl
/usr/bin/seq_cache_populate.pl
/usr/bin/soap2sam.pl
/usr/bin/wgsim
/usr/bin/wgsim_eval.pl
/usr/bin/zoom2sam.pl
/usr/lib/.build-id
/usr/lib/.build-id/04
/usr/lib/.build-id/04/e64184e5c9e8684b5082e392f6c95f4d4e2d08
/usr/lib/.build-id/1b
/usr/lib/.build-id/1b/e255a1eb45fc6984155cb71c50529b9f675e21
/usr/lib/.build-id/3e
/usr/lib/.build-id/3e/f5832e8e1377f70166583ec6d054335f1100c7
/usr/lib/.build-id/8f
/usr/lib/.build-id/8f/d14f6d853db6469433f7f3f436400533d88e40
/usr/lib/.build-id/ac
/usr/lib/.build-id/ac/fe1554ad43f7369305ee863d0f6a32256e86c4
/usr/lib/.build-id/bb
/usr/lib/.build-id/bb/0de73df1cad0316d87d6ab3a5b011e6e1beae6
/usr/lib/.build-id/cc
/usr/lib/.build-id/cc/c60b02cbddf38738f15fcba05650108c22809e
/usr/share/doc/samtools
/usr/share/doc/samtools/AUTHORS
/usr/share/doc/samtools/ChangeLog.old
/usr/share/doc/samtools/NEWS.md
/usr/share/doc/samtools/examples
/usr/share/doc/samtools/examples/00README.txt
/usr/share/doc/samtools/examples/ex1.fa
/usr/share/doc/samtools/examples/ex1.sam.gz
/usr/share/doc/samtools/examples/toy.fa
/usr/share/doc/samtools/examples/toy.sam
/usr/share/licenses/samtools
/usr/share/licenses/samtools/LICENSE
/usr/share/man/man1/samtools-addreplacerg.1.gz
/usr/share/man/man1/samtools-ampliconclip.1.gz
/usr/share/man/man1/samtools-ampliconstats.1.gz
/usr/share/man/man1/samtools-bedcov.1.gz
/usr/share/man/man1/samtools-calmd.1.gz
/usr/share/man/man1/samtools-cat.1.gz
/usr/share/man/man1/samtools-checksum.1.gz
/usr/share/man/man1/samtools-collate.1.gz
/usr/share/man/man1/samtools-consensus.1.gz
/usr/share/man/man1/samtools-coverage.1.gz
/usr/share/man/man1/samtools-cram-size.1.gz
/usr/share/man/man1/samtools-depad.1.gz
/usr/share/man/man1/samtools-depth.1.gz
/usr/share/man/man1/samtools-dict.1.gz
/usr/share/man/man1/samtools-faidx.1.gz
/usr/share/man/man1/samtools-fasta.1.gz
/usr/share/man/man1/samtools-fastq.1.gz
/usr/share/man/man1/samtools-fixmate.1.gz
/usr/share/man/man1/samtools-flags.1.gz
/usr/share/man/man1/samtools-flagstat.1.gz
/usr/share/man/man1/samtools-fqidx.1.gz
/usr/share/man/man1/samtools-head.1.gz
/usr/share/man/man1/samtools-idxstats.1.gz
/usr/share/man/man1/samtools-import.1.gz
/usr/share/man/man1/samtools-index.1.gz
/usr/share/man/man1/samtools-markdup.1.gz
/usr/share/man/man1/samtools-merge.1.gz
/usr/share/man/man1/samtools-mpileup.1.gz
/usr/share/man/man1/samtools-phase.1.gz
/usr/share/man/man1/samtools-quickcheck.1.gz
/usr/share/man/man1/samtools-reference.1.gz
/usr/share/man/man1/samtools-reheader.1.gz
/usr/share/man/man1/samtools-reset.1.gz
/usr/share/man/man1/samtools-rmdup.1.gz
/usr/share/man/man1/samtools-samples.1.gz
/usr/share/man/man1/samtools-sort.1.gz
/usr/share/man/man1/samtools-split.1.gz
/usr/share/man/man1/samtools-stats.1.gz
/usr/share/man/man1/samtools-targetcut.1.gz
/usr/share/man/man1/samtools-tview.1.gz
/usr/share/man/man1/samtools-view.1.gz
/usr/share/man/man1/samtools.1.gz
/usr/share/man/man1/wgsim.1.gz
REQUIRES
/usr/bin/perl
libc.so.6()(64bit)
libc.so.6(GLIBC_2.14)(64bit)
libc.so.6(GLIBC_2.2.5)(64bit)
libc.so.6(GLIBC_2.3)(64bit)
libc.so.6(GLIBC_2.3.4)(64bit)
libc.so.6(GLIBC_2.33)(64bit)
libc.so.6(GLIBC_2.34)(64bit)
libc.so.6(GLIBC_2.4)(64bit)
libc.so.6(GLIBC_2.7)(64bit)
libc.so.6(GLIBC_ABI_DT_RELR)(64bit)
libhts.so.3()(64bit)
libhts.so.3(HTSLIB_1.0)(64bit)
libhts.so.3(HTSLIB_1.1)(64bit)
libhts.so.3(HTSLIB_1.10)(64bit)
libhts.so.3(HTSLIB_1.11)(64bit)
libhts.so.3(HTSLIB_1.12)(64bit)
libhts.so.3(HTSLIB_1.14)(64bit)
libhts.so.3(HTSLIB_1.15)(64bit)
libhts.so.3(HTSLIB_1.16)(64bit)
libhts.so.3(HTSLIB_1.17)(64bit)
libhts.so.3(HTSLIB_1.18)(64bit)
libhts.so.3(HTSLIB_1.2.1)(64bit)
libhts.so.3(HTSLIB_1.21)(64bit)
libhts.so.3(HTSLIB_1.22)(64bit)
libhts.so.3(HTSLIB_1.23)(64bit)
libhts.so.3(HTSLIB_1.3)(64bit)
libhts.so.3(HTSLIB_1.4)(64bit)
libhts.so.3(HTSLIB_1.5)(64bit)
libhts.so.3(HTSLIB_1.6)(64bit)
libhts.so.3(HTSLIB_1.7)(64bit)
libhts.so.3(HTSLIB_1.9)(64bit)
libm.so.6()(64bit)
libm.so.6(GLIBC_2.2.5)(64bit)
libm.so.6(GLIBC_2.29)(64bit)
libncursesw.so.6()(64bit)
libtinfo.so.6()(64bit)
libz.so.1()(64bit)
rpmlib(CompressedFileNames) 3.0.4-1
rpmlib(FileDigests) 4.6.0-1
rpmlib(PayloadFilesHavePrefix) 4.0-1
rpmlib(PayloadIsZstd) 5.4.18-1
rtld(GNU_HASH)
PROVIDES
samtools 1.23.1-1.el10_2
samtools(x86-64) 1.23.1-1.el10_2
CONFIG FILES
/usr/bin/ace2sam
/usr/bin/blast2sam.pl
/usr/bin/bowtie2sam.pl
/usr/bin/export2sam.pl
/usr/bin/fasta-sanitize.pl
/usr/bin/interpolate_sam.pl
/usr/bin/maq2sam-long
/usr/bin/maq2sam-short
/usr/bin/md5fa
/usr/bin/md5sum-lite
/usr/bin/novo2sam.pl
/usr/bin/plot-ampliconstats
/usr/bin/plot-bamstats
/usr/bin/psl2sam.pl
/usr/bin/sam2vcf.pl
/usr/bin/samtools
/usr/bin/samtools.pl
/usr/bin/seq_cache_populate.pl
/usr/bin/soap2sam.pl
/usr/bin/wgsim
/usr/bin/wgsim_eval.pl
/usr/bin/zoom2sam.pl
/usr/lib/.build-id a
/usr/lib/.build-id/04 a
/usr/lib/.build-id/04/e64184e5c9e8684b5082e392f6c95f4d4e2d08 a
/usr/lib/.build-id/1b a
/usr/lib/.build-id/1b/e255a1eb45fc6984155cb71c50529b9f675e21 a
/usr/lib/.build-id/3e a
/usr/lib/.build-id/3e/f5832e8e1377f70166583ec6d054335f1100c7 a
/usr/lib/.build-id/8f a
/usr/lib/.build-id/8f/d14f6d853db6469433f7f3f436400533d88e40 a
/usr/lib/.build-id/ac a
/usr/lib/.build-id/ac/fe1554ad43f7369305ee863d0f6a32256e86c4 a
/usr/lib/.build-id/bb a
/usr/lib/.build-id/bb/0de73df1cad0316d87d6ab3a5b011e6e1beae6 a
/usr/lib/.build-id/cc a
/usr/lib/.build-id/cc/c60b02cbddf38738f15fcba05650108c22809e a
/usr/share/doc/samtools
/usr/share/doc/samtools/AUTHORS d
/usr/share/doc/samtools/ChangeLog.old d
/usr/share/doc/samtools/NEWS.md d
/usr/share/doc/samtools/examples
/usr/share/doc/samtools/examples/00README.txt d
/usr/share/doc/samtools/examples/ex1.fa d
/usr/share/doc/samtools/examples/ex1.sam.gz d
/usr/share/doc/samtools/examples/toy.fa d
/usr/share/doc/samtools/examples/toy.sam d
/usr/share/licenses/samtools
/usr/share/licenses/samtools/LICENSE l
/usr/share/man/man1/samtools-addreplacerg.1.gz d
/usr/share/man/man1/samtools-ampliconclip.1.gz d
/usr/share/man/man1/samtools-ampliconstats.1.gz d
/usr/share/man/man1/samtools-bedcov.1.gz d
/usr/share/man/man1/samtools-calmd.1.gz d
/usr/share/man/man1/samtools-cat.1.gz d
/usr/share/man/man1/samtools-checksum.1.gz d
/usr/share/man/man1/samtools-collate.1.gz d
/usr/share/man/man1/samtools-consensus.1.gz d
/usr/share/man/man1/samtools-coverage.1.gz d
/usr/share/man/man1/samtools-cram-size.1.gz d
/usr/share/man/man1/samtools-depad.1.gz d
/usr/share/man/man1/samtools-depth.1.gz d
/usr/share/man/man1/samtools-dict.1.gz d
/usr/share/man/man1/samtools-faidx.1.gz d
/usr/share/man/man1/samtools-fasta.1.gz d
/usr/share/man/man1/samtools-fastq.1.gz d
/usr/share/man/man1/samtools-fixmate.1.gz d
/usr/share/man/man1/samtools-flags.1.gz d
/usr/share/man/man1/samtools-flagstat.1.gz d
/usr/share/man/man1/samtools-fqidx.1.gz d
/usr/share/man/man1/samtools-head.1.gz d
/usr/share/man/man1/samtools-idxstats.1.gz d
/usr/share/man/man1/samtools-import.1.gz d
/usr/share/man/man1/samtools-index.1.gz d
/usr/share/man/man1/samtools-markdup.1.gz d
/usr/share/man/man1/samtools-merge.1.gz d
/usr/share/man/man1/samtools-mpileup.1.gz d
/usr/share/man/man1/samtools-phase.1.gz d
/usr/share/man/man1/samtools-quickcheck.1.gz d
/usr/share/man/man1/samtools-reference.1.gz d
/usr/share/man/man1/samtools-reheader.1.gz d
/usr/share/man/man1/samtools-reset.1.gz d
/usr/share/man/man1/samtools-rmdup.1.gz d
/usr/share/man/man1/samtools-samples.1.gz d
/usr/share/man/man1/samtools-sort.1.gz d
/usr/share/man/man1/samtools-split.1.gz d
/usr/share/man/man1/samtools-stats.1.gz d
/usr/share/man/man1/samtools-targetcut.1.gz d
/usr/share/man/man1/samtools-tview.1.gz d
/usr/share/man/man1/samtools-view.1.gz d
/usr/share/man/man1/samtools.1.gz d
/usr/share/man/man1/wgsim.1.gz d
LICENSE FILES
MIT
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